- 21. Shuji Ye, Kenichi Tonokura, Mitsuo Koshi, Vibron dynamics in RDX, b-HMX and Tetryl Crystals. Chemical Physics 2003, 293, 1-8..
- 22. Shuji Ye, Kenichi Tonokura, Mitsuo Koshi, Energy transfer rates and impact sensitivities of crystalline explosives. Combustion and Flame 2003, 132, 240-246..
- 23. Shuji Ye, Mitsuo Izumo, Masataka Sakai and Mitsuo Koshi, Phase transition of sulfur during the compression by laser-induced nano-shock. Science and Technology of Energetic Materials 2006, 67, 129-133..
- 24. Shuji Ye, Mitsuo Koshi, Theoretical studies of energy transfer rates of secondary explosives. J.Phys.Chem.B 2006, 110(37), 18515-18520..
- 25. Joseph R.Knab, Jing-Yin Chen, Shuji Ye, Yunfen He, Andrea G. Markelz, Protein Conformational Dynamics measured with Terahertz Time Domain Spectroscopy. IEEE Conference Proceedings of the 31st International Conference on Infrared and Milimeter Waves and 14th International Conference on Terahertz Electronics(IRMMW-THz2006), Shanghai, China, September 18-22, 2006..
- 26. Jing-Yin Chen, Joseph R. Knab, Shuji Ye, Yunfen He, Andrea G. Markelz, Using terahertz spectroscopy as a protein binding assay. Proceedings of SPIE - The International Society for Optical Engineering 2006, 6080, 608006..
- 27. Jing-Yin Chen, J. R. Knab, Shuji Ye, Yunfen He, and A. G. Markelz, Terahertz dielectric assay of solution phase protein binding. Applied Physics Letters 2007, 90, 243901..
- 28. Jing-Yin Chen, Joseph R. Knab, Shuji Ye, Yunfen He, Andrea G. Markelz, Development of Tagless Biosensors for Detecting the Presence of Pathogens. NATO Security through Science Series(Terahertz Frequency Detection and Identification of Materials and Objects) 2007, 123-134..
- 29. Shuji Ye, Joseph Knab, Jing-Yin Chen, Shumin Wang, Miyeon Cheon, Hong Luo, Andrea Markelz. Ultrafast carriers dynamics in GaSb/Mn random alloys. AIP Conference Proceedings (2007), 893(Pt. B, Physics of Semiconductors, Part B), 1307-1308..
- 30. Qing Shi, Shuji Ye, Cornelius Kristalyn, Yanlei Su, Zhongyi Jiang, Zhan Chen, Probing molecular-level surface structures of polyethersulfone/Pluronic F127 blends using sum-frequency generation vibrational spectroscopy. Langmuir 2008, 24, 7939-7946..