Book Chapter:

K. W. Xie, Q. Wang, "Multi-scale Theoretical Studies for Molecular Motors", Chapter 2 of "A Practical Guide to Recent Advances in Multiscale Modelling and Simulation for Biomolecules", AIP Publishing (2023)

Q. Wang and A. B. Kolomeisky,  "Organization of Intracellular Transport", Chapter 4 of "Physics of Molecular and Cellular Processes", Springer (2022)

After 2020 (# co-first author; * co-corresponding author):

10. Y. Hu^#, H. Yang^#... F. Bai* and  Q. Wang*, "Exploring Protein Conformational Changes Using a Large-scale Biophysical Sampling Augmented Deep Learning Strategy", Advanced Science, 2400884 (2024)

9. C. C. Wu^#, Y. Duan^#... Q. Wang*, S. J. Lin*, X. X. Yang* and Q. Dai*, "In-situ Observation of Silk Nanofibril Assembly via Graphene plasmonic infrared sensor", Nature Communications, 15, 4643 (2024)

8. M. W. Li, Y. Hu, Q. Wang, “Exploring the Super-Relaxed State of Human Cardiac β-Myosin by Molecular Dynamics Simulations”, Journal of Physical Chemistry B, 128, (2024)

7. Y. Hu, M. W. Li, Q. Wang, “Allosteric Pathways of SARS and SARS-CoV-2 Spike Protein Identified by Neural Relational Inference”, Proteins., 92: 865-873 (2024)

6. S. M. Wu...Q. Wang*, Y. Y. Shi* and M.Q. Lv*, "Structural basis for TNIP1 binding to FIP200 during mitophagy", Journal of Biological Chemistry, 300(8) 107605 (2024)

5. Z. C. Zhong, Z. Y. Li, J. Yang and Q. Wang, "Unified Model to Predict gRNA Efficiency Across Diverse Cell Lines and CRISPR-Cas9 Systems", Journal of Chemical Information and Modeling, 63, 23, 7320-7329 (2023)

4. A. Bononi^#, Q. Wang^#, et al. "BAP1 is a novel regulator of HIF-1α", PNAS, 120 (4) e2217840120 (2023)

3. K. W. Xie, Q. Wang, "Cooperation and Competition Coexist in Bidirectional Transport by Motor Proteins", Journal of Physical Chemistry Letters, 13(31), 7336-7341 (2022)

2. Q. Wang^#,*, L. Wang^#, Y. M. Zhang^#, X. L. Zhang, L. K. Zhang, W. J. Shang^* and F. Bai^*, "Probing the Allosteric Inhibition Mechanism of a Spike Protein Using Molecular Dynamics Simulations and Active Compound Identifications", Journal of Medicinal Chemistry，65(4)，2827-2835（2022）

1. Q. Wang^#,*, J. Yang^#, Z. C. Zhong, J. A. Vanegas, X. Gao^*, A. B. Kolomeisky^*, "A General Theoretical Framework to Design Base Editors with Reduced Bystander Effects", Nature Communications, 12, 6529 (2021)

Before 2020 (# co-first author; * co-corresponding author):

1. Q. Wang, M. Chen, N. P. Schafer, C. Bueno, P. G. Wolynes, M. N. Waxham and M. S. Cheung, “Assemblies of Calcium/Calmodulin Dependent Kinase II with Actin and Their Dynamic Regulation by Calmodulin in Dendritic Spines”, PNAS, 116 (38), 18937-18942 (2019)

2. Q. Wang, B. Jana, M. R Diehl, M. S. Cheung, A. B. Kolomeisky and J. N. Onuchic, “Molecular Mechanisms of the Interhead Coordination by Interhead Tension in Cytoplasmic Dyneins”, PNAS, 115 (40), 10052-10057 (2018)

3. Q. Wang, M. R. Diehl, B. Jana, M. S. Cheung, A. B. Kolomeisky and J. N. Onuchic, “Molecular Origin of the Weak Susceptibility of Kinesin Velocity to Loads and its Relation to the Collective Behavior of Kinesins”, PNAS, 114, E8611–E8617 (2017)

4. Q. Wang, R. N. Irobalieva, W. Chiu, M. F. Schmid, J. M. Fogg, L. Zechiedrich, and B. Montgomery Pettitt, “Influence of DNA sequence on the structure of minicircles under torsional stress”, Nucleic Acids Research, 45 (13), 7633-7642 (2017)

5. Q. Wang^#, P. Zhang^#, S. Tripathi, L. Hoffman, L. Yin, M. N. Waxham, M. S. Cheung, "Protein recognition and selection through conformational and mutually induced fit", PNAS, 110, 20545-20550 (2013)

6. Q. Wang and B. Montgomery Pettitt, “Sequence Affects the Cyclization of DNA Minicircles”, Journal of Physical Chemistry Letter, 7, pp 1042–1046 (2016)

7. Q. Wang and B. Montgomery Pettitt, “Modeling DNA Thermodynamics under Torsional Stress”, Biophysical Journal, 106, 1182-1193 (2014)

8. Q. Wang and M. S. Cheung, “A Physics-based Approach of Coarse-graining the Cytoplasm of E. coli (CGCYTO)”, Biophysical Journal, 102, 2353-2361 (2012)

9. Q. Wang, Kao-Chen Liang, A. Czader, M. N. Waxham, M. S. Cheung, "The effect of macromolecular crowding, ionic strength and calcium binding on calmodulin dynamics", PLoS Computational Biology, 7: e1002114 (2011)