Yinlei Hu*, Siyuan Wan*, Yuanhanyu Luo*, Yuanzhe Li, Tong Wu, Wentao Deng, Chen Jiang, Shan Jiang, Yueping Zhang, Nianping Liu, Zongcheng Yang, Falai Chen#, Bin Li#, Kun Qu#.  Benchmarking algorithms for single-cell multi-omics prediction and integration. Nature Methods, 21(11) 2024: 2182-2194.

Bin Li*, Wen Zhang*, Chuang Guo*, Hao Xu, Longfei Li, Minghao Fang, Yinlei Hu, Xinye Zhang, Xinfeng Yao, Meifang Tang, Ke Liu, Xuetong Zhao, Jun Lin, Linzhao Cheng, Falai Chen, Tian Xue, Kun Qu#. Benchmarking spatial and single-cell transcriptomics integration methods for transcript distribution prediction and cell type deconvolution. Nature Methods, 19(6) 2022: 662-670.

Yinlei Hu*, Bin Li*, Wen Zhang, Nianping Liu, Pengfei Cai, Falai Chen#, Kun Qu#. WEDGE: imputation of gene expression values from single-cell RNA-seq datasets using biased matrix decomposition. Briefings in Bioinformatics, 22(5), 2021:bbab085

Yinlei Hu*, Bin Li*, Falai Chen#, Kun Qu#. Single-cell data clustering based on sparse optimization and low-rank matrix factorization. G3 Genes|Genomes|Genetics, 11(6), 2021: jkab098.