期刊论文

Biophysics论文(2013之后，*:通讯作者):

1. M. Tian^†, C. Zhang^†, R. Zhang*, J. Yuan* (2021) Collective motion enhances chemotaxis in a two-dimensional bacterial swarm. Biophys. J. 120:1615-1624.

2. H. Huo, R. He*, R. Zhang, J. Yuan* (2021) Swimming Escherichia coli Cells Explore the Environment by Lévy Walk. Appl. Environ. Microbiol. 87:e02429–20.

3. A. Tao, R. Zhang*, J. Yuan* (2020) Direct Mapping from Intracellular Chemotaxis Signaling to Single-Cell Swimming Behavior. Biophys. J. 119:2461–2468.

4. Z. Wu^†, R. He^†, R. Zhang*, J. Yuan* (2020) Swarming Motility Without Flagellar Motor Switching by Reversal of Swimming Direction in E. coli. Front. Microbiol. 11:1042.

5. R. Wang^†, Q. Chen^†, R. Zhang*, J. Yuan* (2020) Measurement of the Internal Frictional Drag of the Bacterial Flagellar Motor by Fluctuation Analysis. Biophys. J. 118:2718–2725.

6. G. Liu, A. Tao, R. Zhang*, J. Yuan* (2020) Robustness in an Ultrasensitive Motor. mBio 11:e03050-19.

7. A. Tao, R. Zhang, J. Yuan* (2020) Characterization of Photophysical Properties of Photoactivatable Fluorescent Proteins for Super-Resolution Microscopy. J. Phys. Chem. B 124:1892-1897.

8. H. Shi^†, S. Ma^†, R. Zhang, J. Yuan* (2019) A hidden state in the turnover of a functioning membrane protein complex. Science Advances 5:eaau6885.

9. R. Wang^†, F. Wang^†, R. He, R. Zhang*, and J. Yuan* (2018) The Second Messenger c-di-GMP Adjusts Motility and Promotes Surface Aggregation of Bacteria. Biophys. J. 115:2242-2249.

10. C. Zhang^†, R. He^†, R. Zhang*, and J. Yuan* (2018) Motor adaptive remodeling speeds up bacterial chemotactic adaptation. Biophys. J. 114:1225-1231.

11. B. Wang, R. Zhang, and J. Yuan* (2017) Limiting (zero-load) speed of the rotary motor of Escherichia coli is independent of the number of torque-generating units. PNAS 114:12478-12482.

12. C. Zhang, R. Zhang, and J. Yuan* (2017) Growth-dependent behavioral difference in bacterial chemotaxis. Phys. Rev. E. 95:062404.

13. F. Wang^†, H. Shi^†, R. He^†, R. Wang, R. Zhang*, J. Yuan* (2017) Nonequilibrium effect in the allosteric regulation of the bacterial flagellar switch. Nature Physics 13:710-714. (^†:co-first authors)

14. R. He, R. Zhang*, and J. Yuan* (2016) Noise-induced increase of sensitivity in bacterial chemotaxis. Biophys. J. 111:430-437.

15. F. Wang, J. Yuan* and H.C. Berg* (2014) Switching dynamics of the bacterial flagellar motor near zero load. PNAS 111:15752-15755.

16. J. Yuan* (2014) 细菌运动行为及趋化信号转导网络的研究. (invited review) 中国科学技术大学学报 44:382-388.

合作Biophysics论文:

1. W. Nie^†, S. Wang^†, R. He^†, Q. Xu, P. Wang, Y. Wu, F. Tian, J. Yuan, B. Zhu*, G. Chen* (2020) A-to-I RNA editing in bacteria increases pathogenicity and tolerance to oxidative stress. PLoS Pathog. 16(8):e1008740.

2. X. Hua, C. Guo, J. Wang, D. Kim-Holzapfel, B. Schroeder, W. Liu, J. Yuan, J. French, S. Jia* (2018) Depth-extended, high-resolution fluorescence microscopy: whole-cell imaging with double-ring phase (DRiP) modulation. Biomed. Opt. Express 10(1):83-91.

3. T. Si, J. Yuan, Y. Wu, J.X. Tang* (2016) Physical biology of bacterial motility. Acta Physica Sinica 65(17):178703.

4. Y. Yuan et al. (2015) Bridging cells of three colors with two bio-orthogonal click reactions. Chemical Science 6(11):6425-6431.

Biophysics论文(2013之前):

1. J. Yuan and H.C. Berg (2013) Ultrasensitivity of an adaptive bacterial motor. J. Mol. Biol. 425:1760-1764.

2. J. Yuan and H.C. Berg (2012) Characteriaztion of the adaptation module of the signaling network in bacterial chemotaxis by measurement of step responses. Biophys. J. 103:L31-L33 (Biophysical Letters).

3. J. Yuan, R.W. Branch, B.G. Hosu and H.C. Berg (2012) Adaptation at the output of the chemotaxis signaling pathway. Nature 484:233-236.

4. J. Yuan, K.A. Fahrner, L. Turner and H.C. Berg (2010) Asymmetry in the clockwise and counter-clockwise rotation of the bacterial flagellar motor. PNAS 107:12846-12949.

5. J. Yuan and H.C. Berg (2010) Temperature and solvent-isotope effects on the flagellar rotary motor near zero load. Biophys. J. 98:2121-2126.

6. J. Yuan and H.C. Berg (2010) Following the behavior of the flagellar rotary motor near zero load. Exp. Mech. 50:1263-1265.

7. J. Yuan, K.A. Fahrner and H.C. Berg (2009) Switching of the bacterial flagellar motor near zero load. J. Mol. Biol. 390:394-400.

8. J. Yuan and H.C. Berg (2008) Resurrection of the flagellar rotary motor near zero load. PNAS 105:1182-1185.

Other Physics论文(@加州理工):

1. B. Plaster et al. (2012) Measurement of the neutron β-asymmetry parameter A0 with ultracold neutrons. Phys. Rev. C 86:055501.

2. R.W Pattie, et al. (2009) First Measurement of the Neutron β Asymmetry with Ultracold Neutrons. Phys. Rev. Lett. 102:012301.

3. B. Plaster, et al. (2008) A solenoidal electron spectrometer for a precision measurement of the neutron β-asymmetry with ultracold neutrons. Nucl. Intrum. Meth. A595:587-598.

4. T.M Ito, et al. (2007) A multiwire proportional chamber for precision studies of neutron β decay angular correlations. Nucl. Intrum. Meth. A571:676-686.

5. J.W. Martin, J. Yuan, et al. (2006) New measurements and quantitative analysis of electron backscattering in the energy range of neutron β-decay. Phys. Rev. C 73:015501.

6. A. Saunders, et al. (2004) Demonstration of a Solid Deuterium Source of Ultra-Cold Neutrons. Phys. Lett. B 593:55-60.

7. T.M Ito, et al. (2004) Parity-Violating Electron Deuteron Scattering and the Proton’s Neutron Weak Axial Vector From Factor. Phys. Rev. Lett. 92:102003.

8. J.W. Martin, J. Yuan, et al. (2003) Measurement of Electron Backscattering in the Energy Range of Neutron Beta Decay. Phys. Rev. C 68:055503.

9. C.L Morris, et al. (2002) Measurements of Ultracold Neutron Lifetimes in Solid Deuterium. Phys. Rev. Lett. 89:272501.

10. J. Yuan, et al. (2001) A Double-Focusing Helmholtz-Coil Spectrometer. Nucl. Intrum. Meth. A465:404.

11. R.E. Hill, et al. (2000) Performance of the prototype LANL solid deuterium ultra-cold neutron source. Nucl. Intrum. Meth. A440:674-681.